For fresh baked bagels and breads in San Francisco go to the House of Bagels on Geary. I buy their bagels by the bakers dozen and I found their challah twists are great for making French toast for my kids. This place could use some seating so I could sit and eat my fresh bagel when I buy it. They are open early everyday.
Pros: bagels, cookies, coffee
Cons: hard to find parking
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